Publications & Preprints

† equal contribution; ∗ student advisee
22
MR Spalinger, M Schwarzfischer, L Hering, C Gottier, S Lang, K Baebler, A Geirnaert, C Lacroix, GE Leventhal, X Dai, D Rawlings, AC Chan, G Rogler, M Scharl Loss of PTPN22 abrogates the beneficial effect of fecal microbiota transfer
Submitted
2018
21
GE Leventhal, M Ackermann, K Schiessl Why microbes secrete molecules to modify their environment: the case of iron-chelating siderophores
Submitted (Preprint: 10.1101/093948)
2018
20
TG Vaughan, GE Leventhal, DA Rasmussen, AJ Drummond, D Welch, T Stadler Estimating epidemic incidence and prevalence from genomic data
Submitted (Preprint: 10.1101/142570)
2018
19
GE Leventhal, C Boix, U Kuechler, T Enke, E Sliwerska, C Holliger, OX Cordero Strain-level diversity drives alternative community types in millimetre-scale granular biofilms
Nature Microbiology 10.1038/s41564-018-0242-3
2018
18
TN Enke, GE Leventhal, M Metzger, J Saavedra, OX Cordero Microscale ecology regulates particulate organic matter turnover in model marine microbial communities
Nature Communications 10.1038/s41467-018-05159-8
2017
17
JI Liechti, GE Leventhal, S Bonhoeffer Host population structure impedes reversion to drug sensitivity after discontinuation of treatment
PLoS Computational Biology 13(8):e1005704 10.1371/journal.pcbi.1005704
2017
16
F Bertels, A Marzel, GE Leventhal, V Mitov, J Fellay, HF Günthard, J Böni, S Yerly, T Klimkait, V Aubert, M Battegay, A Rauch, M Cavassini, A Calmy, E Bernasconi, P Schmid, A Scherrer, V Müller, S Bonhoeffer, RD Kouyos, RR Regoes Dissecting HIV Virulence: Heritability Of Setpoint Viral Load, CD4+ T Cell Decline And Per-Parasite Pathogenicity
Molecular Biology and Evolution 35(1):27-37 10.1093/molbev/msx246
2017
15
N Bachmann, T Turk, C Kadelka, A Marzel, M Shilaih, J Böni, V Aubert, T Klimkait, GE Leventhal, HF Günthard, RD Kouyos Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup
Retrovirology 14(33) 10.1186/s12977-017-0356-3
2017
14
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, B Dearlove, X Didelot, S Frost, A Hossain, JB Joy, M Kendall, D Kühnert, GE Leventhal, R Liang, G Plazzotta, AF Poon, DA Rasmussen, T Stadler, E Volz, C Weis, AJ Leigh Brown, C Fraser Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison
Molecular Biology and Evolution 34(1):185-203 10.1093/molbev/msw217
2016
13
W Delva, GE Leventhal, S Helleringer Connecting the dots: network data and models in HIV epidemiology
AIDS 30(13):2009-2020 10.1097/QAD.0000000000001184
2016
12
L du Plessis, GE Leventhal, S Bonhoeffer How good are statistical models at approximating complex fitness landscapes?
Molecular Biology and Evolution 33(9):2454-2468 10.1093/molbev/msw097
2016
11
GE Leventhal, S Bonhoeffer Potential pitfalls in estimating viral load heritability
Trends in Microbiology 24(9):687-698 10.1016/j.tim.2016.04.008
2015
10
T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, GE Leventhal, AJ Drummond How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?
Proceeding of the Royal Society B: Biological Sciences 282(1806):20150420 10.1098/rspb.2015.0420
2015
9
S Bonhoeffer, C Fraser, GE Leventhal Heritability and the distribution of set point viral load in HIV carriers
PLoS Pathogens 11(2):e1004634 10.1371/journal.ppat.1004634
2015
8
GE Leventhal, AL Hill, M Nowak, S Bonhoeffer Evolution and emergence of infectious diseases in theoretical and real-world networks
Nature Communications 6 10.1038/ncomms7101
2014
7
GE Leventhal, L Wang, RD Kouyos Real-world Interaction Networks Buffer Impact of Small Evolutionary Shifts On Biodiversity
bioRxiv 10.1101/013086
2014
6
C Fraser, K Lythgoe, GE Leventhal, G Shirreff, TD Hollingsworth, S Alizon, S Bonhoeffer Virulence and Pathogenesis of HIV-1 Infection: An Evolutionary Perspective
Science 343(6177):1243727 10.1126/science.1243727
2014
5
GE Leventhal, SR Dünner†,∗, S Barribeau Delayed virulence and limited costs promote fecundity compensation upon infection
American Naturalist 103(4):480-493 10.1086/675242
2014
4
GE Leventhal, H Günthard, S Bonhoeffer, T Stadler Using an epidemiological model for phylogenetic inference reveals density-dependence in HIV transmission
Molecular Biology and Evolution 31(1):6-17 10.1093/molbev/mst172
2013
3
A Hool†,∗, GE Leventhal, S Bonhoeffer Virus-induced target cell activation reconciles set-point viral load heritability and within-host evolution
Epidemics 7:35-35 10.1016/j.epidem.2013.09.002
2012
2
RD Kouyos, GE Leventhal, T Hinkley, M Haddad, J Whitcomb, C Petropoulos, S Bonhoeffer Exploring the Complexity of the HIV-1 Fitness Landscape
PLoS Genetics 8(3):e1002551 10.1371/journal.pgen.1002551
2012
1
GE Leventhal, RD Kouyos, T Stadler, VV Wyl, S Yerly, J Böni, C Cellerai, T Klimkait, HF Günthard, S Bonhoeffer Inferring Epidemic Contact Structure from Phylogenetic Trees
PLoS Computational Biology 8(3):e1002413 10.1371/journal.pcbi.1002413